Coral Reefs

Extreme climatic events are reshaping ecosystems worldwide as individual organisms vary markedly in their ability to withstand these disturbances. Deciphering patterns of persistence on local scales is therefore critical for predicting biodiversity trajectories under intensifying climate extremes. In this study, we examined variation in thermal stress responses among individuals of the coral Stylophora pistillata species complex during a heatwave at Heron Island Reef, Australia. More than half of the focal coral colonies died on the reef, and survival of coral fragments maintained under ex situ common thermal stress conditions was significantly correlated with the survival of their source colony. This demonstrates that survival differences result largely from biological factors rather than differential thermal exposure across reef habitats. Under common garden conditions, we observed striking differences in bleaching severity and survival times among three sympatric cryptic taxa and their highly host-specific symbiont community. Within the most locally common taxon, corals from historically warmer and more seasonally variable reef habitats seem more susceptible to bleaching, contrary to expectations. Together, these results reveal how biological differences among cryptic taxa and among individuals can shape coral responses during a heatwave and advance our understanding of coral vulnerability in a rapidly warming world.

In many polygynous species, males face stronger intrasexual competition, higher energetic demands, and lower survival than females, especially under resource limitation or environmental stress. Such sex-specific vulnerabilities are expected to intensify with climate change. Yet, in sequentially hermaphroditic systems, where individuals change sex during their lifetime, how sex and sex change shape survival remains largely unexplored. We studied sex-specific survival and growth in the haremic protogynous cleaner wrasse Labroides dimidiatus across eight reefs around Lizard Island, Great Barrier Reef. We tracked a total of 731 adult fish (individually recognizable through marking or idiosyncratic color patterns) over two years. This period included the 2024 El Nino-Southern Oscillation (ENSO), which caused a temporary 1-degree increase in water temperature, severe coral bleaching, and coral mortality at Lizard Island. Contrary to expectations from dioecious systems, terminal-phase males exhibited higher survival than initial-phase females under both normal and in particular ENSO conditions. While male mortality was not affected, female mortality more than doubled during the event, indicating greater physiological or energetic vulnerability. A partial explanation for the overall higher female mortality is their generally faster growth rate, which declined in both sexes during the ENSO event. Our findings challenge existing assumptions of male-biased mortality in polygynous species and highlight that sex and sex change fundamentally shape demographic responses to climate extremes.

Settlement, the transition of a swimming planktonic larva to a crawling or sessile benthic juvenile, is a key process in the development of many marine invertebrates. Successful recruitment via larval settlement is critical for the development and maintenance of seafloor ecosystems. Microbial biofilms act as positive cues for larval settlement across diverse taxa, yet the behavioural processes preceding settlement are poorly understood. Here, we investigated age-dependent changes in settlement behaviour in the marine polychaete Platynereis dumerilii larvae in response to Grammatophora marina diatom biofilms. Settlement behaviours (crawling, crawling speed, and track straightness (tortuosity)) were quantified from recordings of larvae at five developmental stages (mid-trochophore to late-nectochaete) in the presence or absence of diatom biofilms, using image segmentation and spot-tracking software. As larvae developed, the proportion of individuals crawling (settlement) over the biofilm increased. Older larvae colonised biofilms more rapidly and showed greater discrimination between G. marina biofilms and non-biofilmed controls. The movement trajectory of older larvae also straightens compared to individuals swimming in the presence of biofilms, or behaviour witnessed in the absence of biofilms. The proportions and magnitudes of these behaviours may reflect changing prioritisation of sensory inputs from physical and chemical cues as larvae develop. Our findings suggest that behavioural traits that are associated with settlement are developmentally programmed in P. dumerilii. Understanding settlement behaviours in P. dumerilii expands on this species behavioural repertoire and sheds light on the evolutionary relationship between marine larvae and microalgal biofilms.

Reef restoration practitioners aim to preserve coral genetic diversity by protecting reefs and cultivating diverse genotypes in coral nurseries. However, cryptic genetic lineages in most corals complicate restoration strategies, as the role of between-lineage genetic divergence remains unclear regarding adaptation. In Montastraea cavernosa, researchers have identified cryptic lineages, some strongly segregated by depth. We conducted a ten-week reciprocal transplantation experiment using two cryptic lineages restricted to shallow water (<10m depth), with one lineage more common on nearshore reefs and the other on offshore reefs. We aimed to quantify lineage-specific responses to the environment that explain the genetic and ecological divergence between the two lineages. Surprisingly, the strongest response was not lineage-specific. Instead, both lineages exhibited strong and similar changes in growth and metabolomic profiles, depending on the transplantation habitat. These results suggest that cryptic lineages employ similar mechanisms of adaptation and acclimatization to environmental challenges, despite their genetic distinction.

Enhanced resilience conferred through sublethal stress pre-exposure may be crucial for reef building corals to cope with variable environments. The effect of stress priming on Acropora cervicornis thermotolerance was evaluated in the context of elevated temperature and ammonium enrichment, 3 and/or 6 M above ambient, respectively. Primed corals were pre-exposed to each stressor individually or in combination for eight days, while non-primed corals remained at ambient conditions. After an eight-day recovery, primed corals and a subset of non-primed corals (naive) were subjected to an acute 15-hour thermal challenge. Coral metabolism, symbiosis, and gene expression were characterized throughout the experiment. Thermal tolerance was quantified as algal symbiont, chlorophyll, and live tissue retention, along with survival probability following acute heating. Primed corals were more likely to retain symbionts and chlorophyll after heat stress and also exhibited slower tissue loss. Moreover, thermal pre-exposure reduced the risk of tissue loss or predicted mortality. Apoptotic regulation differed between primed and naive corals during the initial and secondary heat exposures. Additionally, primed corals exhibited patterns of transcriptional resilience under acute thermal stress. Altogether, results provide support for the capacity of A. cervicornis to gain resilience through pre-exposure to ecologically relevant conditions as well as insights into the molecular mechanisms underpinning this process.

Ostreobium, a siphonous green alga capable of living inside of calcium carbonate substrates, including the skeletons of reef-building corals. This study investigates spectral niche preferences and physiological strategies of Ostreobium using community-wide experiments. We exposed natural Ostreobium communities from Porites lutea collected across shallow, mid, and deeper-water sites to three light conditions: far-red, blue, and white light, simulating healthy shallow-water corals, deeper water conditions, and bleached coral skeletons respectively. Using 16S rRNA metabarcoding and chlorophyll analysis, we assessed community changes and physiological responses over 16 weeks. We show significant variation in spectral preferences among Ostreobium OTUs, with clear evidence for both generalist and specialist strategies. Chlorophyll analysis showed photoacclimation responses through changes in pigment compositions. Our work shows that the spectral architecture of the reef plays a role in structuring Ostreobium communities, but the many mismatches between spectral preferences of OTUs and their observed presence in nature, suggests that inter-species competition is likely to be an even stronger contributor to community structure across the reefs microhabitats. We show that physiological heterogeneity within Ostreobium is strongly phylogenetically structured, and our results clearly highlight the importance of considering OTU-level differences when predicting community responses to environmental disturbances such as coral bleaching. While generalist OTUs dominate natural communities, these do poorly in incubations, and we hypothesise that white light specialists may become key players during coral bleaching events. Our work is a substantial advance in our understanding of Ostreobium ecology and provides a framework for interpreting future environmental sequencing data, offering insights into the functional roles of the different OTUs.

The pillar coral Dendrogyra cylindrus is a rare but iconic member of Caribbean reefs that has suffered range-wide losses. D. cylindrus is highly susceptible to stony coral tissue loss disease (SCTLD), and the outbreak has contributed to the functional extinction of Floridas population of pillar corals. The coral microbiome can impact the health and disease resistance of coral colonies, yet little is known about what constitutes the core microbiome of D. cylindrus. This information is crucial for comparisons of healthy and diseased tissue in pathogen identification studies and can be applied to restoration efforts as a coral health metric. Therefore, we characterized the microbiomes of D. cylindrus colonies ahead of the SCTLD disease front in Belize and Curacao. The most prevalent members of the D. cylindrus microbial community were bacteria for which taxonomy could not be assigned confidently beyond the level of domain as well as the putatively endosymbiotic genera Endozoicomonas, Ca. Amoebophilus, and Spiroplasma. The coral reefs of Belize and Curacao represent distinct Caribbean marine ecoregions, and we documented regional differences in strains among predominant bacterial taxa. The understudied microbiome of D. cylindrus harbors unique bacterial lineages that are in danger of extinction along with its critically endangered coral host, and these bacterial lineages may be important bioindicators during restoration efforts. IMPORTANCETropical corals face global extinction if average temperatures rise by 2{degrees}C (3.6{degrees}F), which may occur as soon as 2050. Included in the loss of charismatic macrofauna like the majestic pillar coral is the loss of the biological and genetic diversity of its symbionts. Here we examined the bacterial and archaeal communities associated with Caribbean pillar corals and found that the microbiome was dominated by taxonomically unclassified and putatively endosymbiotic taxa. Endosymbiotic bacteria, which live inside the coral tissue, are likely to have evolved unique adaptations to become symbionts and may be important to the health and success of pillar corals in ecosystem restoration efforts.

Uncontrolled carbon dioxide emissions from human activities contribute to ocean warming and acidification. These alterations in ocean chemistry threaten marine organisms, such as the true giant clam, Tridacna gigas, which is already imperiled due to overharvesting and habitat destruction. To gain an understanding of the physiological and molecular responses of T. gigas and its symbiotic dinoflagellates to ocean warming and acidification, we subjected juvenile individuals to different treatments simulating predicted seawater pH (7.6 and 8.0) and temperature (28{degrees}C, 30{degrees}C, 32{degrees}C and 34{degrees}C) levels for the next century. Juvenile giant clams were able to tolerate sustained exposure to temperatures of up to 32{degrees}C and pH as low as 7.6, while exposure to higher temperature (34{degrees}C), regardless of pH level, resulted in total mortality after a week. However, symbiosis was compromised even in the sublethal treatments, as indicated by the decrease in Symbiodiniaceae density and changes in symbiont gene expression. Symbionts significantly upregulated genes involved in splicing, translation, fatty acid metabolism, and DNA repair, which may constitute an adaptive response, while downregulating genes involved in photosynthesis and transmembrane transport, suggests impaired transfer of photosynthates to the host. These findings demonstrate the vulnerability of the juvenile T. gigas holobiont to heat stress, highlighting the critical importance of continued conservation and management alongside efforts to mitigate global changes in ocean conditions to safeguard this iconic marine bivalve. Summary StatementThis study investigates physiological and molecular responses of Tridacna gigas to seawater warming and acidification, providing insights into the potential future of endangered giant clam populations in a changing ocean.

Many benthic marine invertebrates disperse by releasing microscopic larvae carried by ocean currents to new sites, where they must settle into appropriate habitats and metamorphose to recruit. Species whose larvae settle in response to water-borne chemical cues live in topographically complex habitats. To study whether sinking in response to dissolved cues affects retention of larvae within complex habitats exposed to ambient water flow moving faster than larvae sink, we used the reef-dwelling sea slug, Phestilla sibogae, whose competent larvae stop swimming and sink in response to dissolved cue from their prey coral, Porites compressa. We conducted field experiments where dye-labelled water, neutrally buoyant particles, and larval mimics (particles that sank at the velocity of larvae of P. sibogae) were released together upstream of reefs of branching corals to determine if larval sinking in water above and within a reef affects larval retention within the reef. Wave-driven water flow measured above a reef in the field had instantaneous velocities peaking at 0.3 m s-1, driving slow net advection of water shoreward at [~]0.02 m s-1. Much slower wave-driven flow moved through the interstices within the reef. In this field flow, sinking by larval mimics caused their retention within a reef after dye-labelled water and neutrally buoyant particles had left. Such retention of sinking larvae within topographically complex benthic communities enhances successful recruitment by exposing larvae to high concentrations of cue for long periods, allowing them time to sink to surfaces, adhere, and undergo metamorphosis.

Understanding habitat association of animals and how they change through ontogeny is critical to predict the likely effects of habitat change on populations. We investigated how fine scale habitat associations of three common coral reef damselfish species changed among life-stages on reefs surrounding Lizard Island, northern Great Barrier Reef. All three species showed distinct habitat selection at settlement, however the degree to which these initial associations changed through ontogeny were species specific. Pomacentrus amboinensis associated with sandy areas throughout all life-stages; Pomacentrus chrysurus settled to areas with high cover of sand and rubble, but displayed no clear habitat preferences as juveniles or adults. Pomacentrus moluccensis settled to areas with high cover of fine branching corals before shifting to areas with relatively high cover of soft corals as adults. We also compared two different approaches to estimate habitat selection; one that quantified the benthic composition within the approximate home range of individuals versus a more widely used approach of recording a single point underneath the focal individual when they were first observed. Although results were broadly similar, the benthic composition approach revealed details that was overlooked using the single point method. Decreases in the availability of any of these preferred benthic habitats may adversely affect future populations, therefore understanding habitat associations and their transitions among life stages will be crucial in predicting future reef fish communities under ongoing coral loss and habitat change. This will require to systematically study a broader range of species, integrating relevant spatial and temporal scales.

AimsSponge microbiomes have been extensively studied, in part due to their potential as sources of novel antimicrobials and other biologics, with most research focusing on Demosponges. Here, we investigate the Hexactinellid sponge Pheronema carpenteri, previously identified as a promising source of antibiotic-producing bacteria. MethodsUsing next-generation sequencing of bacterial 16S rRNA genes and a single sponge metagenome, we examined the composition of bacterial communities of P. carpenteri sponges recovered from the Porcupine Seabight, along with local water and sediment samples. ResultsOur results show that P. carpenteri harbours a microbiome abundant in Proteobacteria (47.1-59.4%) and Actinobacteria (11.5-27.5%), with consistent intra-aggregation similarities and structured intra-sponge communities. A metagenomic analysis revealed the presence of several nitrogen cycling genes (nirK, nosZ, nirS homologues of proteobacterial origin), supporting a suggestion that these sponges may play a role in nitrogen cycling, while biosynthetic gene clusters (BGCs) were limited (4 complete clusters). Notably, bacterial community structures within P. carpenteri aggregations resemble those observed in both low and high microbial abundance (LMA/HMA) sponges. ConclusionsHexactinellids are traditionally considered LMA sponges, so identifying species that deviate from this dichotomy provides new insights into sponge microbiome ecology. Integrating Hexactinellids into both culture-dependent and culture-independent studies will advance our broader understanding of sponge-associated microbial diversity and could inform biodiscovery programmes in marine environments. Impact StatementOur findings support the suggestion that a combination of culture-based and molecular analyses is required to generate a comprehensive picture of the biosynthetic potential of P. carpenteri sponges. We also reveal insights into the ecosystem services that sponge microbiomes may contribute towards. These observations could facilitate a deeper understanding of the biotechnological and environmental value of key marine resources.

Near-shore coral reefs in southern Guam (Mariana Islands) experience severe sedimentation, in particular during the wet season when rainfall and erosion are high. We sampled fragments of the reef-forming coral Porites lobata from opposite ends of a sedimentation gradient in Fouha Bay, southern Guam, during dry and wet seasons. Using DNA metabarcoding, we characterized the diversity and composition of P. lobata-associated Symbiodiniaceae and bacterial microbiome communities. As in many species of Porites, Symbiodiniaceae communities of P. lobata were dominated by variants of Cladocopium C15 with sites showing differences in Symbiodiniaceae communities attributable to variation in these Cladocopium C15 variants. Bacterial microbiomes of P. lobata were dominated by Endozoicomonadaceae, a family of putative coral bacterial endosymbionts involved in nutrient cycling. Site and seasonal differences in bacterial diversity and community composition were apparent. In close proximity to the mouth of the river draining into Fouha Bay, bacterial diversity was highest during the wet season when sedimentation is generally severe. Microbiome reorganization in response to sedimentation may explain this result, but we also found overrepresentation of bacteria associated with terrestrial origin close to the river mouth and/or during the wet season. Together these patterns highlight that coral Symbiodiniaceae and bacterial communities are both spatially and temporally structured in this disturbed system. IMPORTANCEThis study provides a time series dataset of coral-associated microorganisms, including dinoflagellate algae and bacteria, from a tropical bay impacted by sedimentation that results from upstream erosion of disturbed soils. Characterizing temporal patterns of coral-associated microbes provides insights into the dynamic nature of these communities. While microbiome variability across sites and seasons may be a result of acclimatization to different environmental conditions, we identified bacterial groups of putative terrestrial origin in sampled coral microbiomes that may have been exported from eroded soils to the near-shore reef. Considering that disturbed soils act as hotspots for the proliferation of potentially harmful substances, such as antimicrobial resistance genes, understanding microbial community connections at the marine-freshwater-terrestrial interface is an important step toward evaluating environmental impacts across connected ecosystems from ridge to reef.

Symbiodiniaceae dinoflagellates are the primary photosymbionts in reef ecosystems, crucial for reef productivity. Although they are widely recognized as symbionts of animals such as corals and clams, they can occupy a broad range of reef niches, including water, sediment, and macroalgae. Understanding their ecology is typically hampered by their horizontal acquisition. Combining evidence from multiple sample types collected at the same location has the potential to address this issue, but such analyses are surprisingly rare. Here, we analysed Symbiodiniaceae communities across 74 environmental and host samples in one reef flat in Okinawa, Japan. We detected ten Symbiodiniaceae genera or genus-level clades using the ITS2 marker metabarcoding, including Clade J, previously known only from Okinotori Island, Japan. Cladocopium, Symbiodinium, and Durusdinium dominated multicellular hosts (hexacorals and Tridacna). In contrast, foraminiferal hosts were dominated by Cladocopium or genus-specific Freudenthalidium, Fugacium, and Miliolidium. Symbiont communities were mostly specific to the host genera. Water samples, with higher proportions of Durusdinium and free-living Symbiodinium, were distinct from macroalgae and sediment samples. The latter did not differ significantly from each other and contained Freudenthalidium, Fugacium, Miliolidium, Clade I, and Clade J. Only three ITS2 variants were shared across all sample categories, but many variants were unique to hosts or habitats. We highlight that both unicellular and multicellular hosts harbor specific endosymbiont types, with lower diversity than in the surrounding environment. Our results imply that host diversity, availability, and environmental context jointly structure photosymbiont communities at fine spatial scales within coral reef ecosystems.

Oxygen minimum zones (OMZs) are among the most significant abiotic environmental gradients found in the ocean. Yet, fine-scale species distribution patterns of organisms inhabiting OMZs are still spatially limited, hindering our understanding on how these oceanographic features influence species diversity and community structure. Cold-water corals are ecologically important habitat-forming species that are often considered to be sensitive to low seawater dissolved oxygen concentration and thus likely to be useful indicators for exploring change in megafaunal abundance and biodiversity across the OMZ. In the eastern tropical Pacific Ocean, widespread oxygen minimum zones and oxygen limiting zones encompass several thousand square kilometers of area and span several hundred meters of the water column, but typically are strongest between 300-700 m depth. A January 2019 cruise aboard the R/V Falkor using the ROV SuBastian, conducted video transects along 7 seamounts between the Costa Rica Margin and Isla del Coco, as well as within one submarine incised canyon on the north side of Isla del Coco. In this study, we analyzed survey data for patterns in cold-water coral species distribution, diversity, and coral community structure relative to abiotic oceanographic variables in order to gain biogeographic insights to this area. Across all sites, we identified 3675 coral occurrences and 75 unique morphospecies between 177-1565 m. Rapid species turnover with increasing depth occurred primarily across the upper (300 m) and lower OMZ boundaries (700 m). Coral assemblages within the OMZ depths were observed to contain distinct groups of species compared to those below at deeper bathyal depths. Stylasterid hydrocorals were disproportionately abundant above and within the OMZ, while octocoral and black coral species dominated in the more well-oxygenated waters below. Coral assemblage diversity and abundance was depressed within the OMZ, but bathyal diversity peaked at intermediate water depths between 1200-1500 m. In addition to assessing the impact of OMZs on coral communities, these results provide unique insights to the abundance, diversity, and environmental drivers of deep-water coral community assembly in a data-deficient locality, thus improving biodiversity metrics and informing marine conservation efforts off Costa Rica. These baseline data are particularly salient in the light of projected expansion and shoaling of eastern tropical Pacific oxygen minimum zones as a result of decreasing ocean oxygen concentrations driven by ocean warming and other climate drivers.

Symbiosis with photosynthetic microbes is widespread in marine animals, with various symbiont transmission modes and localisation within the host. Here, we characterise the association between the acoel Convolutriloba macropyga and its photosymbionts, identified as Tetraselmis green algae based on rbcL gene phylogenetic analysis. Symbionts are transmitted vertically to asexual offspring and acquired horizontally by juveniles after sexual reproduction. Embryos develop to aposymbiotic juveniles that ingest Tetraselmis through the mouth. Confocal microscopy shows an increase in algae number within juveniles and in their presence at the body wall. Transmission electron microscopy reveals that symbionts lose flagella and theca. In adults, symbionts are extracellular at the body periphery, but can be intracellular within the parenchyma, in contrast with previously described acoel photosymbionts. This likely reflects different host-symbiont interactions, with algae potentially performing photosynthesis and nutrient exchange at the periphery, while undergoing transport or digestion in the parenchyma. Comparative transcriptomics between symbiotic adults and aposymbiotic juveniles shows an enrichment of amino acid synthesis, lipid metabolism, and osmotic and oxidative stress responses in symbiotic adults. Our data shows that algal symbionts engage with host tissues in distinct ways, inside or outside host cells, highlighting a previously unappreciated spatial complexity in host-algae interactions. HighlightsO_LITetraselmis algae are taken up by Convolutriloba macropyga juveniles C_LIO_LIAlgal symbionts in juveniles lose theca and flagella, proliferate, and move to the body wall C_LIO_LISymbionts are extracellular at the body wall and can be intracellular in the parenchyma C_LIO_LIAmino acid synthesis, lipid metabolism, osmoregulation and stress responses are activated in symbiotic adults C_LI

This study investigates the seasonal dynamics of the microbiome within the marine sponge Halichondria panicea from Baltic coastal waters, focusing on its symbiotic relationship with Candidatus Halichondribacter symbioticus. Over 16 months, we observed distinct summer and winter microbial communities, transitioning rapidly between these states during spring and fall. Marine sponges host complex microbiomes composed of diverse microbial taxa that play critical roles in host metabolism and nutrient cycling within marine ecosystems. While our understanding of sponge microbiomes has traditionally been based on static characterizations, the temporal dynamics of these associations across seasonal cycles remain poorly understood. In this study, we investigated temporal variation in bacterial symbionts of Halichondria panicea over 16 months in Baltic coastal waters using high-throughput amplicon sequencing of bacterial 16S rRNA gene sequences. The microbiota of H. panicea exhibited host-specific structure and a high degree of stability across seasons, despite fluctuations in environmental factors such as temperature, salinity, photoperiod intensity, and inorganic nutrient availability. In contrast, bacterial communities in surrounding seawater displayed large seasonal shifts which potentially mix with the sponge bacterial community, suggesting that different degrees of ecological pressures act on free-living and symbiotic marine bacteria. These findings establish an empirical baseline for identifying abnormal shifts in symbiont communities, which could be indicative of environmental stress or biological disturbance events.

Coral reefs deliver vital services via a complex three-dimensional framework sustained by the balance between calcium carbonate production and erosion, or the net carbonate budget state. In many tropical western Atlantic reefs, ecological decline has reduced carbonate production, yielding near-neutral or negative budgets. Yet some reefs retain high coral cover and, theoretically, should also have high net positive budgets, yet often show modest carbonate accumulation. We used the remote reef of Cayo Arenas in the Campeche Bank, Gulf of Mexico, to test whether in reefs under suboptimal (variable) environmental conditions, high coral production is offset by robust bioeroder communities, producing neutral budgets. At 14 sites, we quantified carbonate producers and bioeroders to estimate gross production, bioerosion, and net budget states. Despite relatively high live coral cover, mean net carbonate budgets were approximately neutral. Crucially, this neutrality arose not from depressed biological activity (as in degraded reefs) but from an active equilibrium: vigorous carbonate production coupled with substantial bioerosion. These reefs, therefore, represent a contemporary, functional reef state in net stasis. Distinguishing active-neutral from impoverishment-neutral regimes is critical for predicting reef trajectories under environmental change and for targeting management, although near-stasis emerging from high carbonate turnover can appear functionally intact yet operate with limited buffering capacity against net carbonate loss.

Ocean warming is altering abiotic environments and biotic interactions experienced by marine organisms, where sensitive early developmental windows occur in biologically complex seawater communities. The impact of these interactions on developmental processes and fitness in hosts is not well understood, but likely contingent on the establishment of a host-associated microbiome. Here, we hypothesize that temperature and microbial exposure during embryogenesis influence larval microbiome assembly and host morphology. Strongylocentrotus purpuratus embryos were raised in low microbial richness (LMR) or high microbial richness (HMR) seawater at ambient (14 {degrees}C) or elevated (18 {degrees}C) temperature, then collected at 2, 4, and 6 days post-fertilization (dpf) following multiple feedings. Higher microbial diversity was observed in larvae that developed in HMR seawater when compared to LMR. Differences in relative abundances of dominant microbial families between seawater and larvae suggest some degree of host selectivity in microbiome assembly. Temperature did not strongly alter microbiome composition, but both temperature and microbial condition led to differences in larval morphology by 6 dpf, potentially due to enrichment of microbes with chemoheterotrophic functions. By linking how temperature and microbial communities interact with host development, we contribute novel insights into how early-life environmental conditions impact holobiont formation and morphology. One sentence summaryEarly developmental temperature and microbial conditions shape larval microbiome establishment and morphology.

Linking animal movements to environmental drivers is essential for understanding ecological processes and anticipating species responses to climate change. We investigated habitat-specific movements in a globally significant aggregation of loggerhead turtles (Caretta caretta) nesting in Cabo Verde. Satellite tags on 15 adults (12 females, 3 males) provided multi-year tracks spanning breeding, migration, and foraging habitats. Movements and phenology differed by habitat. During the breeding season, females used either coastal areas, remaining within [~]20 m depth, or undertook long looping forays up to 360 km. Males showed two strategies: two remained resident in Cabo Verde waters, including Fra, the largest male tracked (Curved carapace length of 105 cm compared with a male mean of 90.7 {+/-} 10.3 cm), while the third migrated annually to distant foraging grounds and returned ahead of the subsequent breeding season. In foraging habitats, turtles adopted neritic or oceanic strategies: neritic turtles remained localised in warm, productive waters, whereas oceanic turtles ranged widely in deeper, less productive areas. Time- and space-shift analyses showed that oceanic foragers used intermediate sea surface temperature and chlorophyll-a conditions relative to nearby or temporally shifted alternatives, consistent with movement within a thermal-trophic trade-off. Together, these results show how sex, body size, and energy balance drive habitat-specific movement dynamics in a changing ocean.

Global marine heatwaves have devastated tropical coral reefs, and further mortality is projected under ongoing climate change. Identifying thermally tolerant coral colonies is therefore a priority for conservation, restoration, and research. Portable acute heat stress assays (e.g., CBASS) enable rapid, standardized estimates of coral thermal tolerance under field conditions. However, it remains unresolved whether such experimentally derived metrics (ED5, ED50, DW) predict bleaching and mortality in situ. Here, we quantified acute thermal tolerance metrics for 2,068 coral colonies across 12 common Indo-Pacific species, six months prior to an unprecedented heat stress event in northeastern Peninsular Malaysia and compared experimentally derived ED and DW values to subsequent bleaching severity and mortality in the field. Experimental thermal tolerance metrics explained only a limited proportion of variation in bleaching outcomes and survival. Predictive power varied among species and was higher in slow-growing species. Our findings suggest that while acute heat stress assays capture substantial variation in coral thermal tolerance, their ability to predict in situ outcomes is context-dependent and diminishes under severe thermal stress. Ultimately, in situ coral bleaching under severe heat stress may reduce the discriminatory capacity of acute assay-derived tolerance metrics.